Here's a great tutorial on programming the Atmel AVR microntrollers on using Timers. This is a very in depth and informative instruction. It provides a lot of the details and sample code on how to program the Timers in all the different ways that are possible.
This is found the largest forum for AVR microcontrollers , AVRFreaks.com
More Tutorials on C programming for the AVR microcontrollers is here
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